STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE39052.1Cysteine-rich secretory protein family protein. (177 aa)    
Predicted Functional Partners:
SDE39033.1
L,D-transpeptidase catalytic domain.
 
     0.775
SDE30907.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.698
SDE39398.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.698
SDF18918.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.698
SDF07731.1
Hypothetical protein.
  
     0.646
SDE30343.1
Hypothetical protein.
  
     0.609
SDF04542.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-); Belongs to the binding-protein-dependent transport system permease family.
  
 
   0.579
SDF02066.1
Hypothetical protein.
  
     0.578
SDE91781.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
   0.527
SDF31408.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-)/amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-); Belongs to the binding-protein-dependent transport system permease family.
   
   0.527
Your Current Organism:
Salipiger thiooxidans
NCBI taxonomy Id: 282683
Other names: Citreicella thiooxidans, Citreicella thiooxidans Sorokin et al. 2006, DSM 10146, S. thiooxidans, UNIQEM U 228, strain CHLG 1
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