STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG17032.1Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)    
Predicted Functional Partners:
APG20952.1
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.956
APG17031.1
Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.955
A3780_05440
Transposase; Frameshifted; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.923
APG17029.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.844
APG17030.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.693
APG18231.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.596
APG16737.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.572
APG18747.1
Multidrug RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.572
APG16337.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.562
APG16713.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.562
Your Current Organism:
Kosakonia radicincitans
NCBI taxonomy Id: 283686
Other names: CCUG 50898, CIP 108468, DSM 16656, Enterobacter radicincitans, Enterobacter radicincitans Kampfer et al. 2005, Enterobacter sp. ICB22, Enterobacter sp. ICB561, Enterobacter sp. ICB565, Enterobacter sp. ICB567, Enterobacter sp. ICB573, K. radicincitans, Kosakonia radicincitans (Kampfer et al. 2005) Brady et al. 2013, LMG 23767, LMG:23767, strain D5/23
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