STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG19274.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)    
Predicted Functional Partners:
APG19279.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.949
APG16967.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.937
APG16968.1
Phage portal protein; gpQ; Q protein; structural capsid protein; bacteriophage P2-like virions include a head and a tail; Q is a connector or portal protein that joins phage head and tail; Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.927
APG20010.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.925
APG16944.1
Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.924
APG20022.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.922
APG20946.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.920
APG20017.1
GPO family capsid scaffolding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.915
APG20016.1
gpN; N protein; structural capsid protein; bacteriophage P2-like virions include a head and a tail; N is the major head protein; the mature capsid contains mainly the processed form of the protein N*, which lacks 31 amino acids at the N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.911
A3780_21520
Phage tail protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.908
Your Current Organism:
Kosakonia radicincitans
NCBI taxonomy Id: 283686
Other names: CCUG 50898, CIP 108468, DSM 16656, Enterobacter radicincitans, Enterobacter radicincitans Kampfer et al. 2005, Enterobacter sp. ICB22, Enterobacter sp. ICB561, Enterobacter sp. ICB565, Enterobacter sp. ICB567, Enterobacter sp. ICB573, K. radicincitans, Kosakonia radicincitans (Kampfer et al. 2005) Brady et al. 2013, LMG 23767, LMG:23767, strain D5/23
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