STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG19869.1pilM family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)    
Predicted Functional Partners:
APG19870.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.809
APG19868.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.771
APG21093.1
Type IVB pilus formation outer membrane protein, R64 PilN family; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.717
APG21092.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.636
APG19866.1
Pilus assembly protein PilR; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.586
A3780_20720
Shufflon protein B; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.580
APG19865.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.567
APG19864.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
APG19867.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.521
APG19871.1
Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.495
Your Current Organism:
Kosakonia radicincitans
NCBI taxonomy Id: 283686
Other names: CCUG 50898, CIP 108468, DSM 16656, Enterobacter radicincitans, Enterobacter radicincitans Kampfer et al. 2005, Enterobacter sp. ICB22, Enterobacter sp. ICB561, Enterobacter sp. ICB565, Enterobacter sp. ICB567, Enterobacter sp. ICB573, K. radicincitans, Kosakonia radicincitans (Kampfer et al. 2005) Brady et al. 2013, LMG 23767, LMG:23767, strain D5/23
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