STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG20563.1Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
APG20564.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.983
APG20565.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.979
APG17066.1
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.951
APG17106.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.942
APG16660.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.924
gsiD
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.916
APG19821.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.912
nikC
Nickel ABC transporter permease subunit NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.907
APG19503.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.901
oppC
Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.896
Your Current Organism:
Kosakonia radicincitans
NCBI taxonomy Id: 283686
Other names: CCUG 50898, CIP 108468, DSM 16656, Enterobacter radicincitans, Enterobacter radicincitans Kampfer et al. 2005, Enterobacter sp. ICB22, Enterobacter sp. ICB561, Enterobacter sp. ICB565, Enterobacter sp. ICB567, Enterobacter sp. ICB573, K. radicincitans, Kosakonia radicincitans (Kampfer et al. 2005) Brady et al. 2013, LMG 23767, LMG:23767, strain D5/23
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.