STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALQ06882.1GTPase HflX; Involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)    
Predicted Functional Partners:
ALQ06883.1
Membrane protease HflK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.916
ALQ06880.1
tRNA dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.906
ALQ06881.1
RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.903
ALQ06884.1
Protease modulator HflC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.856
rplI
50S ribosomal protein L9; In Escherichia coli this protein is wrapped around the base of the L1 stalk; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.842
ALQ09475.1
50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.833
ALQ06855.1
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.809
ALQ06750.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.806
rpmF
Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.797
rplD
L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.796
Your Current Organism:
Pseudoalteromonas sp. Bsw20308
NCBI taxonomy Id: 283699
Other names: P. sp. Bsw20308
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.