SLC28A3 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SLC28A3

Sodium/nucleoside cotransporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. (725 aa)

Predicted Functional Partners:

SLC29A3

0.726

ABCC5

0.692

NT5C

0.570

CTDP1

0.559

ABCG4

0.546

FRMD3

0.505

TYMP

0.469

nt5c2

0.454

pola2

0.453

SLC35F5

0.449

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCC5	ABCG4	ENSACAP00000010947	ENSACAP00000002376	ATP binding cassette subfamily C member 5.	ATP binding cassette subfamily G member 4.	0.617
ABCC5	SLC28A3	ENSACAP00000010947	ENSACAP00000001360	ATP binding cassette subfamily C member 5.	Sodium/nucleoside cotransporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.	0.692
ABCC5	SLC29A3	ENSACAP00000010947	ENSACAP00000015744	ATP binding cassette subfamily C member 5.	Solute carrier family 29 member 3.	0.535
ABCG4	ABCC5	ENSACAP00000002376	ENSACAP00000010947	ATP binding cassette subfamily G member 4.	ATP binding cassette subfamily C member 5.	0.617
ABCG4	CTDP1	ENSACAP00000002376	ENSACAP00000018624	ATP binding cassette subfamily G member 4.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.567
ABCG4	NT5C	ENSACAP00000002376	ENSACAP00000022763	ATP binding cassette subfamily G member 4.	5', 3'-nucleotidase, cytosolic.	0.555
ABCG4	SLC28A3	ENSACAP00000002376	ENSACAP00000001360	ATP binding cassette subfamily G member 4.	Sodium/nucleoside cotransporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.	0.546
ABCG4	SLC29A3	ENSACAP00000002376	ENSACAP00000015744	ATP binding cassette subfamily G member 4.	Solute carrier family 29 member 3.	0.694
ABCG4	nt5c2	ENSACAP00000002376	ENSACAP00000004576	ATP binding cassette subfamily G member 4.	Uncharacterized protein.	0.423
ABCG4	pola2	ENSACAP00000002376	ENSACAP00000001035	ATP binding cassette subfamily G member 4.	DNA_pol_E_B domain-containing protein.	0.421
CTDP1	ABCG4	ENSACAP00000018624	ENSACAP00000002376	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	ATP binding cassette subfamily G member 4.	0.567
CTDP1	NT5C	ENSACAP00000018624	ENSACAP00000022763	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	5', 3'-nucleotidase, cytosolic.	0.567
CTDP1	SLC28A3	ENSACAP00000018624	ENSACAP00000001360	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Sodium/nucleoside cotransporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.	0.559
CTDP1	SLC29A3	ENSACAP00000018624	ENSACAP00000015744	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Solute carrier family 29 member 3.	0.776
CTDP1	nt5c2	ENSACAP00000018624	ENSACAP00000004576	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Uncharacterized protein.	0.762
CTDP1	pola2	ENSACAP00000018624	ENSACAP00000001035	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	DNA_pol_E_B domain-containing protein.	0.467
FRMD3	SLC28A3	ENSACAP00000002035	ENSACAP00000001360	FERM domain containing 3.	Sodium/nucleoside cotransporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.	0.505
NT5C	ABCG4	ENSACAP00000022763	ENSACAP00000002376	5', 3'-nucleotidase, cytosolic.	ATP binding cassette subfamily G member 4.	0.555
NT5C	CTDP1	ENSACAP00000022763	ENSACAP00000018624	5', 3'-nucleotidase, cytosolic.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.567
NT5C	SLC28A3	ENSACAP00000022763	ENSACAP00000001360	5', 3'-nucleotidase, cytosolic.	Sodium/nucleoside cotransporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.	0.570