PGBD5 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PGBD5

PiggyBac transposable element derived 5. (546 aa)

Predicted Functional Partners:

HARBI1

0.788

ZMYM2

0.722

ZMYM3

0.720

GIN1

0.719

G1KBN5_ANOCA

0.713

G1KJZ5_ANOCA

0.712

FAM83C

0.709

SAMD11

0.680

tmem145

0.677

RABGGTB

0.669

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAM83C	PGBD5	ENSACAP00000005397	ENSACAP00000001426	Family with sequence similarity 83 member C.	PiggyBac transposable element derived 5.	0.709
FAM83C	SAMD11	ENSACAP00000005397	ENSACAP00000008475	Family with sequence similarity 83 member C.	Sterile alpha motif domain containing 11.	0.709
G1KBN5_ANOCA	GIN1	ENSACAP00000003123	ENSACAP00000006979	THAP-type domain-containing protein.	Gypsy retrotransposon integrase 1.	0.492
G1KBN5_ANOCA	HARBI1	ENSACAP00000003123	ENSACAP00000003949	THAP-type domain-containing protein.	Harbinger transposase derived 1.	0.456
G1KBN5_ANOCA	PGBD5	ENSACAP00000003123	ENSACAP00000001426	THAP-type domain-containing protein.	PiggyBac transposable element derived 5.	0.713
G1KJZ5_ANOCA	PGBD5	ENSACAP00000010140	ENSACAP00000001426	Uncharacterized protein.	PiggyBac transposable element derived 5.	0.712
GIN1	G1KBN5_ANOCA	ENSACAP00000006979	ENSACAP00000003123	Gypsy retrotransposon integrase 1.	THAP-type domain-containing protein.	0.492
GIN1	HARBI1	ENSACAP00000006979	ENSACAP00000003949	Gypsy retrotransposon integrase 1.	Harbinger transposase derived 1.	0.787
GIN1	PGBD5	ENSACAP00000006979	ENSACAP00000001426	Gypsy retrotransposon integrase 1.	PiggyBac transposable element derived 5.	0.719
GIN1	ZMYM2	ENSACAP00000006979	ENSACAP00000002092	Gypsy retrotransposon integrase 1.	Zinc finger MYM-type containing 2.	0.477
GIN1	ZMYM3	ENSACAP00000006979	ENSACAP00000020519	Gypsy retrotransposon integrase 1.	Zinc finger MYM-type containing 3.	0.444
HARBI1	G1KBN5_ANOCA	ENSACAP00000003949	ENSACAP00000003123	Harbinger transposase derived 1.	THAP-type domain-containing protein.	0.456
HARBI1	GIN1	ENSACAP00000003949	ENSACAP00000006979	Harbinger transposase derived 1.	Gypsy retrotransposon integrase 1.	0.787
HARBI1	PGBD5	ENSACAP00000003949	ENSACAP00000001426	Harbinger transposase derived 1.	PiggyBac transposable element derived 5.	0.788
HARBI1	ZMYM2	ENSACAP00000003949	ENSACAP00000002092	Harbinger transposase derived 1.	Zinc finger MYM-type containing 2.	0.717
HARBI1	ZMYM3	ENSACAP00000003949	ENSACAP00000020519	Harbinger transposase derived 1.	Zinc finger MYM-type containing 3.	0.714
PGBD5	FAM83C	ENSACAP00000001426	ENSACAP00000005397	PiggyBac transposable element derived 5.	Family with sequence similarity 83 member C.	0.709
PGBD5	G1KBN5_ANOCA	ENSACAP00000001426	ENSACAP00000003123	PiggyBac transposable element derived 5.	THAP-type domain-containing protein.	0.713
PGBD5	G1KJZ5_ANOCA	ENSACAP00000001426	ENSACAP00000010140	PiggyBac transposable element derived 5.	Uncharacterized protein.	0.712
PGBD5	GIN1	ENSACAP00000001426	ENSACAP00000006979	PiggyBac transposable element derived 5.	Gypsy retrotransposon integrase 1.	0.719