Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX46DEAD-box helicase 46. (880 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.986
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.983
SF3A1
Splicing factor 3a subunit 1.
   
 0.975
SF3B2
Splicing factor 3b subunit 2.
   
 0.973
SF3B3
Splicing factor 3b subunit 3.
   
 0.972
SF3A3
Splicing factor 3a subunit 3.
   
 0.971
PHF5A
PHD finger protein 5A.
    
 0.970
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.966
RBM25
RNA binding motif protein 25.
   
 0.960
SF3B4
Splicing factor 3b subunit 4.
    
 0.957
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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