Trdn protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Trdn

Asp-B-Hydro_N domain-containing protein. (66 aa)

Predicted Functional Partners:

CASQ2

0.907

CASQ1

0.907

Ryr1

0.800

Ryr2

0.800

ASPH

0.800

FANCM

0.669

POLD2

0.598

LOC100553231

0.591

POLD1

0.568

SNRPE

0.531

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASPH	CASQ1	ENSACAP00000005958	ENSACAP00000015569	Aspartate beta-hydroxylase.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.943
ASPH	CASQ2	ENSACAP00000005958	ENSACAP00000003186	Aspartate beta-hydroxylase.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.943
ASPH	Ryr1	ENSACAP00000005958	ENSACAP00000002071	Aspartate beta-hydroxylase.	RIH_assoc domain-containing protein.	0.877
ASPH	Ryr2	ENSACAP00000005958	ENSACAP00000003508	Aspartate beta-hydroxylase.	Uncharacterized protein.	0.877
ASPH	Trdn	ENSACAP00000005958	ENSACAP00000001570	Aspartate beta-hydroxylase.	Asp-B-Hydro_N domain-containing protein.	0.800
CASQ1	ASPH	ENSACAP00000015569	ENSACAP00000005958	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Aspartate beta-hydroxylase.	0.943
CASQ1	CASQ2	ENSACAP00000015569	ENSACAP00000003186	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.901
CASQ1	Ryr1	ENSACAP00000015569	ENSACAP00000002071	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	RIH_assoc domain-containing protein.	0.919
CASQ1	Ryr2	ENSACAP00000015569	ENSACAP00000003508	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Uncharacterized protein.	0.951
CASQ1	Trdn	ENSACAP00000015569	ENSACAP00000001570	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Asp-B-Hydro_N domain-containing protein.	0.907
CASQ2	ASPH	ENSACAP00000003186	ENSACAP00000005958	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Aspartate beta-hydroxylase.	0.943
CASQ2	CASQ1	ENSACAP00000003186	ENSACAP00000015569	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.901
CASQ2	Ryr1	ENSACAP00000003186	ENSACAP00000002071	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	RIH_assoc domain-containing protein.	0.919
CASQ2	Ryr2	ENSACAP00000003186	ENSACAP00000003508	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Uncharacterized protein.	0.950
CASQ2	Trdn	ENSACAP00000003186	ENSACAP00000001570	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Asp-B-Hydro_N domain-containing protein.	0.907
FANCM	POLD1	ENSACAP00000004068	ENSACAP00000020141	FA complementation group M.	DNA polymerase.	0.881
FANCM	Trdn	ENSACAP00000004068	ENSACAP00000001570	FA complementation group M.	Asp-B-Hydro_N domain-containing protein.	0.669
LOC100553231	SNRPE	ENSACAP00000009875	ENSACAP00000009865	Tudor domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.960
LOC100553231	Trdn	ENSACAP00000009875	ENSACAP00000001570	Tudor domain-containing protein.	Asp-B-Hydro_N domain-containing protein.	0.591
POLD1	FANCM	ENSACAP00000020141	ENSACAP00000004068	DNA polymerase.	FA complementation group M.	0.881