TCEANC protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCEANC

Transcription elongation factor A N-terminal and central domain containing. (309 aa)

Predicted Functional Partners:

LEO1

0.823

H9GVV6_ANOCA

0.802

polr2j

0.796

POLR2F

0.794

POLR2K

0.791

POLR2D

0.790

POLR1D

0.790

POLR2H

0.788

TWISTNB

0.781

POLR2L

0.781

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H9GVV6_ANOCA	LEO1	ENSACAP00000021567	ENSACAP00000001805	Uncharacterized protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.992
H9GVV6_ANOCA	POLR1D	ENSACAP00000021567	ENSACAP00000015479	Uncharacterized protein.	RNA polymerase I and III subunit D.	0.999
H9GVV6_ANOCA	POLR2D	ENSACAP00000021567	ENSACAP00000005129	Uncharacterized protein.	RNA polymerase II subunit D.	0.999
H9GVV6_ANOCA	POLR2F	ENSACAP00000021567	ENSACAP00000015030	Uncharacterized protein.	RNA polymerase II subunit F.	0.999
H9GVV6_ANOCA	POLR2H	ENSACAP00000021567	ENSACAP00000002728	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
H9GVV6_ANOCA	POLR2K	ENSACAP00000021567	ENSACAP00000017962	Uncharacterized protein.	RNA polymerase II subunit K.	0.999
H9GVV6_ANOCA	POLR2L	ENSACAP00000021567	ENSACAP00000015241	Uncharacterized protein.	RNA polymerase II subunit L.	0.999
H9GVV6_ANOCA	TCEANC	ENSACAP00000021567	ENSACAP00000001595	Uncharacterized protein.	Transcription elongation factor A N-terminal and central domain containing.	0.802
H9GVV6_ANOCA	TWISTNB	ENSACAP00000021567	ENSACAP00000011549	Uncharacterized protein.	TWIST neighbor.	0.999
H9GVV6_ANOCA	polr2j	ENSACAP00000021567	ENSACAP00000000232	Uncharacterized protein.	RNA polymerase II subunit J.	0.999
LEO1	H9GVV6_ANOCA	ENSACAP00000001805	ENSACAP00000021567	LEO1 homolog, Paf1/RNA polymerase II complex component.	Uncharacterized protein.	0.992
LEO1	POLR2D	ENSACAP00000001805	ENSACAP00000005129	LEO1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II subunit D.	0.992
LEO1	POLR2F	ENSACAP00000001805	ENSACAP00000015030	LEO1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II subunit F.	0.993
LEO1	POLR2H	ENSACAP00000001805	ENSACAP00000002728	LEO1 homolog, Paf1/RNA polymerase II complex component.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.992
LEO1	POLR2K	ENSACAP00000001805	ENSACAP00000017962	LEO1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II subunit K.	0.992
LEO1	POLR2L	ENSACAP00000001805	ENSACAP00000015241	LEO1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II subunit L.	0.992
LEO1	TCEANC	ENSACAP00000001805	ENSACAP00000001595	LEO1 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor A N-terminal and central domain containing.	0.823
LEO1	polr2j	ENSACAP00000001805	ENSACAP00000000232	LEO1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II subunit J.	0.993
POLR1D	H9GVV6_ANOCA	ENSACAP00000015479	ENSACAP00000021567	RNA polymerase I and III subunit D.	Uncharacterized protein.	0.999
POLR1D	POLR2D	ENSACAP00000015479	ENSACAP00000005129	RNA polymerase I and III subunit D.	RNA polymerase II subunit D.	0.714