STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUF60Poly(U) binding splicing factor 60. (541 aa)    
Predicted Functional Partners:
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.862
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.860
U2SURP
U2 snRNP associated SURP domain containing.
   
 0.859
DHX15
DEAH-box helicase 15.
   
 0.846
RBM17
RNA binding motif protein 17.
   
 
0.842
PHF5A
PHD finger protein 5A.
   
 
 0.840
DDX46
DEAD-box helicase 46.
    
 0.836
SF3B3
Splicing factor 3b subunit 3.
    
 0.831
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.819
SF3B1
Splicing factor 3b subunit 1.
   
 0.816
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.