SMTNL2 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SMTNL2

Smoothelin like 2. (185 aa)

Predicted Functional Partners:

ABLIM2

0.772

CCNA2

0.750

YWHAQ

0.675

SFN

0.675

CKS1B

0.613

CKS2

0.613

FAM110D

0.611

TMEM35A

0.610

RMND5A

0.610

VPS37A

0.609

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABLIM2	SMTNL2	ENSACAP00000011528	ENSACAP00000001740	Actin binding LIM protein family member 2.	Smoothelin like 2.	0.772
CCNA2	CKS1B	ENSACAP00000012424	ENSACAP00000015575	Cyclin A2; Belongs to the cyclin family.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.917
CCNA2	CKS2	ENSACAP00000012424	ENSACAP00000016301	Cyclin A2; Belongs to the cyclin family.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.917
CCNA2	SMTNL2	ENSACAP00000012424	ENSACAP00000001740	Cyclin A2; Belongs to the cyclin family.	Smoothelin like 2.	0.750
CKS1B	CCNA2	ENSACAP00000015575	ENSACAP00000012424	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Cyclin A2; Belongs to the cyclin family.	0.917
CKS1B	SMTNL2	ENSACAP00000015575	ENSACAP00000001740	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Smoothelin like 2.	0.613
CKS2	CCNA2	ENSACAP00000016301	ENSACAP00000012424	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Cyclin A2; Belongs to the cyclin family.	0.917
CKS2	SMTNL2	ENSACAP00000016301	ENSACAP00000001740	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Smoothelin like 2.	0.613
FAM110D	SMTNL2	ENSACAP00000017512	ENSACAP00000001740	Family with sequence similarity 110 member D.	Smoothelin like 2.	0.611
FAM110D	TMEM35A	ENSACAP00000017512	ENSACAP00000007779	Family with sequence similarity 110 member D.	Transmembrane protein 35A.	0.610
RMND5A	SMTNL2	ENSACAP00000011327	ENSACAP00000001740	Required for meiotic nuclear division 5 homolog A.	Smoothelin like 2.	0.610
SFN	SMTNL2	ENSACAP00000016405	ENSACAP00000001740	Stratifin; Belongs to the 14-3-3 family.	Smoothelin like 2.	0.675
SMTNL2	ABLIM2	ENSACAP00000001740	ENSACAP00000011528	Smoothelin like 2.	Actin binding LIM protein family member 2.	0.772
SMTNL2	CCNA2	ENSACAP00000001740	ENSACAP00000012424	Smoothelin like 2.	Cyclin A2; Belongs to the cyclin family.	0.750
SMTNL2	CKS1B	ENSACAP00000001740	ENSACAP00000015575	Smoothelin like 2.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.613
SMTNL2	CKS2	ENSACAP00000001740	ENSACAP00000016301	Smoothelin like 2.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.613
SMTNL2	FAM110D	ENSACAP00000001740	ENSACAP00000017512	Smoothelin like 2.	Family with sequence similarity 110 member D.	0.611
SMTNL2	RMND5A	ENSACAP00000001740	ENSACAP00000011327	Smoothelin like 2.	Required for meiotic nuclear division 5 homolog A.	0.610
SMTNL2	SFN	ENSACAP00000001740	ENSACAP00000016405	Smoothelin like 2.	Stratifin; Belongs to the 14-3-3 family.	0.675
SMTNL2	TMEM35A	ENSACAP00000001740	ENSACAP00000007779	Smoothelin like 2.	Transmembrane protein 35A.	0.610