STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN9Calpain 9; Belongs to the peptidase C2 family. (690 aa)    
Predicted Functional Partners:
CAST
Calpastatin.
   
 0.718
CAPNS1
Calpain small subunit 1.
   
0.645
CBLIF
Cobalamin binding intrinsic factor.
      
 0.572
ITSN2
Intersectin 2.
   
 
  0.568
TCN1
Transcobalamin 1.
      
 0.482
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
   
 
 0.478
PEF1
Penta-EF-hand domain containing 1.
   
0.419
PDCD6
Programmed cell death 6.
   
0.419
EPC2
Enhancer of polycomb homolog.
      
 0.416
PPP1CC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.415
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.