STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOPXHOP homeobox. (73 aa)    
Predicted Functional Partners:
HOMER1
Homer scaffold protein 1.
      
 0.534
LGR4
Leucine rich repeat containing G protein-coupled receptor 4.
   
  
 0.509
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
   
  
 0.491
LRIG1
Leucine rich repeats and immunoglobulin like domains 1.
      
 0.465
CELSR1
Cadherin EGF LAG seven-pass G-type receptor 1; Belongs to the G-protein coupled receptor 2 family.
      
 0.454
CLIC5
Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.
   
  
 0.448
NKX2-5
NK2 homeobox 5.
   
 
 0.418
SRF
Serum response factor.
    
 
 0.417
OTP
Orthopedia homeobox.
      
 0.410
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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