STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vcam1Uncharacterized protein. (295 aa)    
Predicted Functional Partners:
ITGA4
Integrin subunit alpha 4; Belongs to the integrin alpha chain family.
   
 0.971
itga9
Integrin subunit alpha 9; Belongs to the integrin alpha chain family.
   
 0.948
ITGB7
Integrin beta; Belongs to the integrin beta chain family.
   
 
 0.929
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 
 0.929
IL6
Interleukin 6.
   
 
 0.723
LOC100565764
Uncharacterized protein.
   
 
 0.668
GPR88
G protein-coupled receptor 88.
 
  
 0.597
TLR4
Toll like receptor 4; Belongs to the Toll-like receptor family.
   
 0.580
IL10
Interleukin 10.
     
 0.567
CXCL12
C-X-C motif chemokine ligand 12.
   
  
 0.555
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.