ABCC6 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABCC6

ATP binding cassette subfamily C member 6. (1454 aa)

Predicted Functional Partners:

KATNAL2

0.496

ABCE1

0.481

VCP

0.478

gopc

0.469

SPAST

0.451

RAPGEF4

0.445

ABCB4

0.434

ABCG8

0.431

ABCB7

0.424

DYNC1H1

0.406

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB4	ABCB7	ENSACAP00000016033	ENSACAP00000001218	ATP binding cassette subfamily B member 4.	ATP binding cassette subfamily B member 7.	0.528
ABCB4	ABCC6	ENSACAP00000016033	ENSACAP00000003575	ATP binding cassette subfamily B member 4.	ATP binding cassette subfamily C member 6.	0.434
ABCB4	ABCE1	ENSACAP00000016033	ENSACAP00000003393	ATP binding cassette subfamily B member 4.	ATP binding cassette subfamily E member 1.	0.506
ABCB4	KATNAL2	ENSACAP00000016033	ENSACAP00000011813	ATP binding cassette subfamily B member 4.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.496
ABCB7	ABCB4	ENSACAP00000001218	ENSACAP00000016033	ATP binding cassette subfamily B member 7.	ATP binding cassette subfamily B member 4.	0.528
ABCB7	ABCC6	ENSACAP00000001218	ENSACAP00000003575	ATP binding cassette subfamily B member 7.	ATP binding cassette subfamily C member 6.	0.424
ABCB7	ABCE1	ENSACAP00000001218	ENSACAP00000003393	ATP binding cassette subfamily B member 7.	ATP binding cassette subfamily E member 1.	0.751
ABCC6	ABCB4	ENSACAP00000003575	ENSACAP00000016033	ATP binding cassette subfamily C member 6.	ATP binding cassette subfamily B member 4.	0.434
ABCC6	ABCB7	ENSACAP00000003575	ENSACAP00000001218	ATP binding cassette subfamily C member 6.	ATP binding cassette subfamily B member 7.	0.424
ABCC6	ABCE1	ENSACAP00000003575	ENSACAP00000003393	ATP binding cassette subfamily C member 6.	ATP binding cassette subfamily E member 1.	0.481
ABCC6	ABCG8	ENSACAP00000003575	ENSACAP00000015078	ATP binding cassette subfamily C member 6.	ATP binding cassette subfamily G member 8.	0.431
ABCC6	DYNC1H1	ENSACAP00000003575	ENSACAP00000000137	ATP binding cassette subfamily C member 6.	Dynein cytoplasmic 1 heavy chain 1.	0.406
ABCC6	KATNAL2	ENSACAP00000003575	ENSACAP00000011813	ATP binding cassette subfamily C member 6.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.496
ABCC6	RAPGEF4	ENSACAP00000003575	ENSACAP00000006135	ATP binding cassette subfamily C member 6.	Rap guanine nucleotide exchange factor 4.	0.445
ABCC6	SPAST	ENSACAP00000003575	ENSACAP00000000809	ATP binding cassette subfamily C member 6.	Spastin; Belongs to the AAA ATPase family.	0.451
ABCC6	VCP	ENSACAP00000003575	ENSACAP00000011651	ATP binding cassette subfamily C member 6.	Valosin containing protein; Belongs to the AAA ATPase family.	0.478
ABCC6	gopc	ENSACAP00000003575	ENSACAP00000014036	ATP binding cassette subfamily C member 6.	PDZ domain-containing protein.	0.469
ABCE1	ABCB4	ENSACAP00000003393	ENSACAP00000016033	ATP binding cassette subfamily E member 1.	ATP binding cassette subfamily B member 4.	0.506
ABCE1	ABCB7	ENSACAP00000003393	ENSACAP00000001218	ATP binding cassette subfamily E member 1.	ATP binding cassette subfamily B member 7.	0.751
ABCE1	ABCC6	ENSACAP00000003393	ENSACAP00000003575	ATP binding cassette subfamily E member 1.	ATP binding cassette subfamily C member 6.	0.481