STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx43Uncharacterized protein; Belongs to the DEAD box helicase family. (648 aa)    
Predicted Functional Partners:
SLC17A5
Solute carrier family 17 member 5.
    
 
 0.700
RIMS1
Regulating synaptic membrane exocytosis 1.
      
 0.676
atad2
Bromo domain-containing protein.
   
 
 0.672
SF3B1
Splicing factor 3b subunit 1.
   
 0.587
MAGOH
Mago homolog, exon junction complex subunit.
    
 0.562
RANBP2
RAN binding protein 2.
  
 0.553
SF3B3
Splicing factor 3b subunit 3.
   
 0.539
PRPF6
Pre-mRNA processing factor 6.
   
 0.538
NOP58
NOP58 ribonucleoprotein.
  
 
 0.527
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.525
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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