STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD7Programmed cell death 7. (244 aa)    
Predicted Functional Partners:
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
    
 0.881
SNRNP48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
   
 0.769
SNRNP70
Small nuclear ribonucleoprotein U1 subunit 70.
    
 0.759
SNRNP25
Small nuclear ribonucleoprotein U11/U12 subunit 25.
     
 0.750
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 0.741
SMARCB1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
   
 0.729
PBRM1
Polybromo 1.
    
 0.703
SMARCE1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
    
 0.678
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.667
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
  0.667
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.