GCNT1 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GCNT1

Glucosaminyl (N-acetyl) transferase 1. (436 aa)

Predicted Functional Partners:

C1GALT1

0.966

LOC100554192

0.948

B4GALT5

0.942

ST3GAL2

0.940

GALNT3

0.940

GALNT5

0.940

ST6GALNAC1

0.940

ST3GAL1

0.940

GALNT6

0.940

c1galt1c1

0.935

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4GALT5	C1GALT1	ENSACAP00000015541	ENSACAP00000012798	Beta-1,4-galactosyltransferase 5.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	0.608
B4GALT5	GCNT1	ENSACAP00000015541	ENSACAP00000005437	Beta-1,4-galactosyltransferase 5.	Glucosaminyl (N-acetyl) transferase 1.	0.942
B4GALT5	LOC100554192	ENSACAP00000015541	ENSACAP00000006239	Beta-1,4-galactosyltransferase 5.	Uncharacterized protein.	0.601
C1GALT1	B4GALT5	ENSACAP00000012798	ENSACAP00000015541	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Beta-1,4-galactosyltransferase 5.	0.608
C1GALT1	GALNT3	ENSACAP00000012798	ENSACAP00000002579	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Polypeptide N-acetylgalactosaminyltransferase.	0.684
C1GALT1	GALNT5	ENSACAP00000012798	ENSACAP00000007675	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Polypeptide N-acetylgalactosaminyltransferase.	0.883
C1GALT1	GALNT6	ENSACAP00000012798	ENSACAP00000011767	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Polypeptide N-acetylgalactosaminyltransferase 6.	0.818
C1GALT1	GCNT1	ENSACAP00000012798	ENSACAP00000005437	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Glucosaminyl (N-acetyl) transferase 1.	0.966
C1GALT1	LOC100554192	ENSACAP00000012798	ENSACAP00000006239	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Uncharacterized protein.	0.902
C1GALT1	ST3GAL1	ENSACAP00000012798	ENSACAP00000011678	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	ST3 beta-galactoside alpha-2,3-sialyltransferase 1; Belongs to the glycosyltransferase 29 family.	0.987
C1GALT1	ST3GAL2	ENSACAP00000012798	ENSACAP00000002427	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	ST3 beta-galactoside alpha-2,3-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.959
C1GALT1	ST6GALNAC1	ENSACAP00000012798	ENSACAP00000008296	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1; Belongs to the glycosyltransferase 29 family.	0.965
C1GALT1	c1galt1c1	ENSACAP00000012798	ENSACAP00000010613	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Uncharacterized protein.	0.999
GALNT3	C1GALT1	ENSACAP00000002579	ENSACAP00000012798	Polypeptide N-acetylgalactosaminyltransferase.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	0.684
GALNT3	GCNT1	ENSACAP00000002579	ENSACAP00000005437	Polypeptide N-acetylgalactosaminyltransferase.	Glucosaminyl (N-acetyl) transferase 1.	0.940
GALNT3	LOC100554192	ENSACAP00000002579	ENSACAP00000006239	Polypeptide N-acetylgalactosaminyltransferase.	Uncharacterized protein.	0.684
GALNT3	ST6GALNAC1	ENSACAP00000002579	ENSACAP00000008296	Polypeptide N-acetylgalactosaminyltransferase.	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1; Belongs to the glycosyltransferase 29 family.	0.916
GALNT3	c1galt1c1	ENSACAP00000002579	ENSACAP00000010613	Polypeptide N-acetylgalactosaminyltransferase.	Uncharacterized protein.	0.669
GALNT5	C1GALT1	ENSACAP00000007675	ENSACAP00000012798	Polypeptide N-acetylgalactosaminyltransferase.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	0.883
GALNT5	GCNT1	ENSACAP00000007675	ENSACAP00000005437	Polypeptide N-acetylgalactosaminyltransferase.	Glucosaminyl (N-acetyl) transferase 1.	0.940