STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF3PHD finger protein 3. (2036 aa)    
Predicted Functional Partners:
NIPBL
Nipped-B protein.
   
  
 0.964
H9GVV6_ANOCA
Uncharacterized protein.
    
  0.822
POLR2A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.798
G1KZ53_ANOCA
Uncharacterized protein.
    
 0.798
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
  
 0.695
USP34
Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.
   
 
  0.685
RHOV
Ras homolog family member V.
      
 0.676
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.656
BPTF
Bromodomain PHD finger transcription factor.
   
   
0.652
polr2j
RNA polymerase II subunit J.
    
 0.650
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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