STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1234 aa)    
Predicted Functional Partners:
rps27a
Ubiquitin-like domain-containing protein.
   
 0.879
LOC103282543
Uncharacterized protein.
    
 0.871
GMPS
Guanine monophosphate synthase.
   
 
 0.843
H9GRS7_ANOCA
Ubiquitin-like domain-containing protein.
   
 0.818
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.818
uvssa
Uncharacterized protein.
    
 0.811
DNMT1
DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
   
 
 0.792
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.772
H9GK63_ANOCA
Uncharacterized protein.
   
 0.735
ubc
Uncharacterized protein.
   
 0.735
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.