STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100560412Uncharacterized protein. (390 aa)    
Predicted Functional Partners:
SMAD4
Mothers against decapentaplegic homolog.
   
 0.938
LOC100567233
c-SKI_SMAD_bind domain-containing protein.
 
      0.900
SMAD3
Mothers against decapentaplegic homolog.
   
 0.813
SMAD2
Mothers against decapentaplegic homolog.
   
 0.813
SMAD5
Mothers against decapentaplegic homolog.
   
 0.688
SMAD1
Mothers against decapentaplegic homolog.
   
 0.686
smad9
Mothers against decapentaplegic homolog.
   
 0.686
ncor1
Uncharacterized protein.
   
 0.613
NCOR2
Nuclear receptor corepressor 2.
   
 0.613
INTS8
Integrator complex subunit 8.
   
 0.604
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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