LOC103281583 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103281583

Uncharacterized protein. (365 aa)

Predicted Functional Partners:

NIFK

0.993

CEBPZ

0.992

DDX27

0.991

NOC2L

0.990

EBNA1BP2

0.982

RRP12

0.978

PUM3

0.978

utp14a

0.975

RPF2

0.972

GTPBP4

0.971

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEBPZ	DDX27	ENSACAP00000001403	ENSACAP00000001937	CCAAT enhancer binding protein zeta.	DEAD-box helicase 27.	0.945
CEBPZ	EBNA1BP2	ENSACAP00000001403	ENSACAP00000012979	CCAAT enhancer binding protein zeta.	EBNA1 binding protein 2.	0.969
CEBPZ	GTPBP4	ENSACAP00000001403	ENSACAP00000003022	CCAAT enhancer binding protein zeta.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.987
CEBPZ	LOC103281583	ENSACAP00000001403	ENSACAP00000012974	CCAAT enhancer binding protein zeta.	Uncharacterized protein.	0.992
CEBPZ	NIFK	ENSACAP00000001403	ENSACAP00000004531	CCAAT enhancer binding protein zeta.	Nucleolar protein interacting with the FHA domain of MKI67.	0.956
CEBPZ	NOC2L	ENSACAP00000001403	ENSACAP00000008439	CCAAT enhancer binding protein zeta.	NOC2 like nucleolar associated transcriptional repressor.	0.998
CEBPZ	PUM3	ENSACAP00000001403	ENSACAP00000003107	CCAAT enhancer binding protein zeta.	Pumilio RNA binding family member 3.	0.974
CEBPZ	RPF2	ENSACAP00000001403	ENSACAP00000011089	CCAAT enhancer binding protein zeta.	Ribosome production factor 2 homolog.	0.981
CEBPZ	RRP12	ENSACAP00000001403	ENSACAP00000002229	CCAAT enhancer binding protein zeta.	Ribosomal RNA processing 12 homolog.	0.978
CEBPZ	utp14a	ENSACAP00000001403	ENSACAP00000008926	CCAAT enhancer binding protein zeta.	Uncharacterized protein.	0.969
DDX27	CEBPZ	ENSACAP00000001937	ENSACAP00000001403	DEAD-box helicase 27.	CCAAT enhancer binding protein zeta.	0.945
DDX27	EBNA1BP2	ENSACAP00000001937	ENSACAP00000012979	DEAD-box helicase 27.	EBNA1 binding protein 2.	0.958
DDX27	GTPBP4	ENSACAP00000001937	ENSACAP00000003022	DEAD-box helicase 27.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.857
DDX27	LOC103281583	ENSACAP00000001937	ENSACAP00000012974	DEAD-box helicase 27.	Uncharacterized protein.	0.991
DDX27	NIFK	ENSACAP00000001937	ENSACAP00000004531	DEAD-box helicase 27.	Nucleolar protein interacting with the FHA domain of MKI67.	0.974
DDX27	NOC2L	ENSACAP00000001937	ENSACAP00000008439	DEAD-box helicase 27.	NOC2 like nucleolar associated transcriptional repressor.	0.977
DDX27	PUM3	ENSACAP00000001937	ENSACAP00000003107	DEAD-box helicase 27.	Pumilio RNA binding family member 3.	0.897
DDX27	RPF2	ENSACAP00000001937	ENSACAP00000011089	DEAD-box helicase 27.	Ribosome production factor 2 homolog.	0.944
DDX27	RRP12	ENSACAP00000001937	ENSACAP00000002229	DEAD-box helicase 27.	Ribosomal RNA processing 12 homolog.	0.669
DDX27	utp14a	ENSACAP00000001937	ENSACAP00000008926	DEAD-box helicase 27.	Uncharacterized protein.	0.975