LOC100563151 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100563151

HECT domain-containing protein. (1109 aa)

Predicted Functional Partners:

FAM13A

0.753

MYPN

0.746

TRIP12

0.675

isg15

0.607

ube2l6

0.574

UBE2L3

0.515

RASGRF1

0.456

ube2n

0.430

IFIH1

0.426

PSMD4

0.424

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAM13A	LOC100563151	ENSACAP00000013091	ENSACAP00000012981	Family with sequence similarity 13 member A.	HECT domain-containing protein.	0.753
FAM13A	MYPN	ENSACAP00000013091	ENSACAP00000010281	Family with sequence similarity 13 member A.	Myopalladin.	0.763
IFIH1	LOC100563151	ENSACAP00000013841	ENSACAP00000012981	Interferon induced with helicase C domain 1.	HECT domain-containing protein.	0.426
IFIH1	isg15	ENSACAP00000013841	ENSACAP00000018290	Interferon induced with helicase C domain 1.	Uncharacterized protein.	0.942
IFIH1	ube2l6	ENSACAP00000013841	ENSACAP00000007029	Interferon induced with helicase C domain 1.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.499
LOC100563151	FAM13A	ENSACAP00000012981	ENSACAP00000013091	HECT domain-containing protein.	Family with sequence similarity 13 member A.	0.753
LOC100563151	IFIH1	ENSACAP00000012981	ENSACAP00000013841	HECT domain-containing protein.	Interferon induced with helicase C domain 1.	0.426
LOC100563151	MYPN	ENSACAP00000012981	ENSACAP00000010281	HECT domain-containing protein.	Myopalladin.	0.746
LOC100563151	PSMD4	ENSACAP00000012981	ENSACAP00000014737	HECT domain-containing protein.	Proteasome 26S subunit, non-ATPase 4.	0.424
LOC100563151	RASGRF1	ENSACAP00000012981	ENSACAP00000015378	HECT domain-containing protein.	Ras protein specific guanine nucleotide releasing factor 1.	0.456
LOC100563151	TRIP12	ENSACAP00000012981	ENSACAP00000005555	HECT domain-containing protein.	Thyroid hormone receptor interactor 12.	0.675
LOC100563151	UBE2L3	ENSACAP00000012981	ENSACAP00000001643	HECT domain-containing protein.	Ubiquitin conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.	0.515
LOC100563151	isg15	ENSACAP00000012981	ENSACAP00000018290	HECT domain-containing protein.	Uncharacterized protein.	0.607
LOC100563151	ube2l6	ENSACAP00000012981	ENSACAP00000007029	HECT domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.574
LOC100563151	ube2n	ENSACAP00000012981	ENSACAP00000012340	HECT domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.430
MYPN	FAM13A	ENSACAP00000010281	ENSACAP00000013091	Myopalladin.	Family with sequence similarity 13 member A.	0.763
MYPN	LOC100563151	ENSACAP00000010281	ENSACAP00000012981	Myopalladin.	HECT domain-containing protein.	0.746
PSMD4	LOC100563151	ENSACAP00000014737	ENSACAP00000012981	Proteasome 26S subunit, non-ATPase 4.	HECT domain-containing protein.	0.424
PSMD4	TRIP12	ENSACAP00000014737	ENSACAP00000005555	Proteasome 26S subunit, non-ATPase 4.	Thyroid hormone receptor interactor 12.	0.582
PSMD4	UBE2L3	ENSACAP00000014737	ENSACAP00000001643	Proteasome 26S subunit, non-ATPase 4.	Ubiquitin conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.	0.453