STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSX2Visual system homeobox 2. (386 aa)    
Predicted Functional Partners:
ATOH7
Atonal bHLH transcription factor 7.
   
  
 0.734
SIX6
SIX homeobox 6.
   
  
 0.654
BHLHE22
Basic helix-loop-helix family member e22.
   
  
 0.591
RCVRN
Recoverin.
      
 0.578
SIX3
SIX homeobox 3.
   
  
 0.559
ISL1
ISL LIM homeobox 1.
      
 0.533
RLBP1
Retinaldehyde binding protein 1.
      
 0.510
FOXN4
Forkhead box N4.
      
 0.505
rho
Rhodopsin; Photoreceptor. Light-induced isomerization of 11-cis to all- trans retinal triggers a conformational change that activates signaling via G-proteins; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
   
  
 0.503
rh2
Blue-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. This opsin uses a vitamin A2 chromophore; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
   
  
 0.499
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.