gas7 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gas7

Growth arrest specific 7. (430 aa)

Predicted Functional Partners:

ITSN2

0.997

ITSN1

0.989

GAK

0.872

CLTCL1

0.825

CLHC1

0.825

CLTC

0.825

WAS

0.791

WASL

0.791

FAU

0.764

rps27a

0.759

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLHC1	FAU	ENSACAP00000003184	ENSACAP00000010630	Clathrin heavy chain linker domain-containing protein 1.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.493
CLHC1	GAK	ENSACAP00000003184	ENSACAP00000001613	Clathrin heavy chain linker domain-containing protein 1.	Cyclin G associated kinase.	0.999
CLHC1	ITSN1	ENSACAP00000003184	ENSACAP00000004907	Clathrin heavy chain linker domain-containing protein 1.	Intersectin 1.	0.983
CLHC1	ITSN2	ENSACAP00000003184	ENSACAP00000013537	Clathrin heavy chain linker domain-containing protein 1.	Intersectin 2.	0.987
CLHC1	WAS	ENSACAP00000003184	ENSACAP00000006165	Clathrin heavy chain linker domain-containing protein 1.	WASP actin nucleation promoting factor.	0.521
CLHC1	WASL	ENSACAP00000003184	ENSACAP00000022831	Clathrin heavy chain linker domain-containing protein 1.	WASP like actin nucleation promoting factor.	0.521
CLHC1	gas7	ENSACAP00000003184	ENSACAP00000016722	Clathrin heavy chain linker domain-containing protein 1.	Growth arrest specific 7.	0.825
CLHC1	rps27a	ENSACAP00000003184	ENSACAP00000003208	Clathrin heavy chain linker domain-containing protein 1.	Ubiquitin-like domain-containing protein.	0.485
CLTC	CLTCL1	ENSACAP00000012536	ENSACAP00000002436	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.900
CLTC	FAU	ENSACAP00000012536	ENSACAP00000010630	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.493
CLTC	GAK	ENSACAP00000012536	ENSACAP00000001613	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Cyclin G associated kinase.	0.999
CLTC	ITSN1	ENSACAP00000012536	ENSACAP00000004907	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Intersectin 1.	0.983
CLTC	ITSN2	ENSACAP00000012536	ENSACAP00000013537	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Intersectin 2.	0.987
CLTC	WAS	ENSACAP00000012536	ENSACAP00000006165	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	WASP actin nucleation promoting factor.	0.611
CLTC	WASL	ENSACAP00000012536	ENSACAP00000022831	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	WASP like actin nucleation promoting factor.	0.611
CLTC	gas7	ENSACAP00000012536	ENSACAP00000016722	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Growth arrest specific 7.	0.825
CLTC	rps27a	ENSACAP00000012536	ENSACAP00000003208	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Ubiquitin-like domain-containing protein.	0.576
CLTCL1	CLTC	ENSACAP00000002436	ENSACAP00000012536	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.900
CLTCL1	FAU	ENSACAP00000002436	ENSACAP00000010630	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.493
CLTCL1	GAK	ENSACAP00000002436	ENSACAP00000001613	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Cyclin G associated kinase.	0.999