STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS4BVacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (442 aa)    
Predicted Functional Partners:
VTA1
Vesicle trafficking 1.
   
 0.996
CHMP5
Charged multivesicular body protein 5.
   
 0.984
CHMP1B
Charged multivesicular body protein 1B.
   
 0.983
CHMP1A
Charged multivesicular body protein 1A.
   
 0.983
CHMP2A
Charged multivesicular body protein 2A.
    
 0.963
CHMP6
Charged multivesicular body protein 6.
    
 0.963
IST1
IST1 factor associated with ESCRT-III.
   
 0.957
C17orf75
Chromosome 17 open reading frame 75.
    
 0.907
CHMP4B
Charged multivesicular body protein 4B.
    
 0.906
CHMP4C
Charged multivesicular body protein 4C.
    
 0.906
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.