LOC100554570 protein (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100554570

RRM domain-containing protein. (148 aa)

Predicted Functional Partners:

FAU

0.583

srsf2

0.557

LOC100563157

0.553

LOC100565538

0.541

NCBP1

0.527

pabpn1

0.518

HSPA12A

0.490

SRSF3

0.476

SNRPG

0.469

HNRNPK

0.468

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAU	LOC100554570	ENSACAP00000010630	ENSACAP00000021404	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	RRM domain-containing protein.	0.583
FAU	SNRPG	ENSACAP00000010630	ENSACAP00000007711	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Small nuclear ribonucleoprotein G.	0.583
HNRNPK	LOC100554570	ENSACAP00000001603	ENSACAP00000021404	Heterogeneous nuclear ribonucleoprotein K.	RRM domain-containing protein.	0.468
HNRNPK	LOC100565538	ENSACAP00000001603	ENSACAP00000014847	Heterogeneous nuclear ribonucleoprotein K.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.665
HNRNPK	NCBP1	ENSACAP00000001603	ENSACAP00000004405	Heterogeneous nuclear ribonucleoprotein K.	Nuclear cap binding protein subunit 1.	0.472
HNRNPK	SRSF3	ENSACAP00000001603	ENSACAP00000016368	Heterogeneous nuclear ribonucleoprotein K.	Serine and arginine rich splicing factor 3.	0.822
HNRNPK	srsf2	ENSACAP00000001603	ENSACAP00000008371	Heterogeneous nuclear ribonucleoprotein K.	RRM domain-containing protein.	0.727
HSPA12A	LOC100554570	ENSACAP00000009931	ENSACAP00000021404	Heat shock protein family A (Hsp70) member 12A.	RRM domain-containing protein.	0.490
LOC100554570	FAU	ENSACAP00000021404	ENSACAP00000010630	RRM domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.583
LOC100554570	HNRNPK	ENSACAP00000021404	ENSACAP00000001603	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K.	0.468
LOC100554570	HSPA12A	ENSACAP00000021404	ENSACAP00000009931	RRM domain-containing protein.	Heat shock protein family A (Hsp70) member 12A.	0.490
LOC100554570	LOC100563157	ENSACAP00000021404	ENSACAP00000020876	RRM domain-containing protein.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.553
LOC100554570	LOC100565538	ENSACAP00000021404	ENSACAP00000014847	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.541
LOC100554570	NCBP1	ENSACAP00000021404	ENSACAP00000004405	RRM domain-containing protein.	Nuclear cap binding protein subunit 1.	0.527
LOC100554570	SNRPG	ENSACAP00000021404	ENSACAP00000007711	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.469
LOC100554570	SRSF3	ENSACAP00000021404	ENSACAP00000016368	RRM domain-containing protein.	Serine and arginine rich splicing factor 3.	0.476
LOC100554570	pabpn1	ENSACAP00000021404	ENSACAP00000006063	RRM domain-containing protein.	RRM domain-containing protein.	0.518
LOC100554570	srsf2	ENSACAP00000021404	ENSACAP00000008371	RRM domain-containing protein.	RRM domain-containing protein.	0.557
LOC100563157	LOC100554570	ENSACAP00000020876	ENSACAP00000021404	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	RRM domain-containing protein.	0.553
LOC100565538	HNRNPK	ENSACAP00000014847	ENSACAP00000001603	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Heterogeneous nuclear ribonucleoprotein K.	0.665