Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ99265.1 | SEA31062.1 | SAMN04487990_10542 | SAMN04487990_11010 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.926 |
SDZ99265.1 | recR | SAMN04487990_10542 | SAMN04487990_10199 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.422 |
SDZ99265.1 | uvrB | SAMN04487990_10542 | SAMN04487990_101153 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.994 |
SDZ99265.1 | uvrC | SAMN04487990_10542 | SAMN04487990_10772 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.889 |
SEA14459.1 | SEA14512.1 | SAMN04487990_10771 | SAMN04487990_10773 | NTE family protein. | Uncharacterized conserved protein. | 0.532 |
SEA14459.1 | SEA14540.1 | SAMN04487990_10771 | SAMN04487990_10774 | NTE family protein. | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | 0.532 |
SEA14459.1 | SEA14573.1 | SAMN04487990_10771 | SAMN04487990_10775 | NTE family protein. | Hypothetical protein. | 0.604 |
SEA14459.1 | SEA14595.1 | SAMN04487990_10771 | SAMN04487990_10776 | NTE family protein. | 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | 0.545 |
SEA14459.1 | uvrC | SAMN04487990_10771 | SAMN04487990_10772 | NTE family protein. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.784 |
SEA14512.1 | SEA14459.1 | SAMN04487990_10773 | SAMN04487990_10771 | Uncharacterized conserved protein. | NTE family protein. | 0.532 |
SEA14512.1 | SEA14540.1 | SAMN04487990_10773 | SAMN04487990_10774 | Uncharacterized conserved protein. | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | 0.954 |
SEA14512.1 | SEA14573.1 | SAMN04487990_10773 | SAMN04487990_10775 | Uncharacterized conserved protein. | Hypothetical protein. | 0.951 |
SEA14512.1 | SEA14595.1 | SAMN04487990_10773 | SAMN04487990_10776 | Uncharacterized conserved protein. | 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | 0.806 |
SEA14512.1 | uvrC | SAMN04487990_10773 | SAMN04487990_10772 | Uncharacterized conserved protein. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.569 |
SEA14540.1 | SEA14459.1 | SAMN04487990_10774 | SAMN04487990_10771 | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | NTE family protein. | 0.532 |
SEA14540.1 | SEA14512.1 | SAMN04487990_10774 | SAMN04487990_10773 | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | Uncharacterized conserved protein. | 0.954 |
SEA14540.1 | SEA14573.1 | SAMN04487990_10774 | SAMN04487990_10775 | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | Hypothetical protein. | 0.952 |
SEA14540.1 | SEA14595.1 | SAMN04487990_10774 | SAMN04487990_10776 | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | 0.804 |
SEA14540.1 | uvrC | SAMN04487990_10774 | SAMN04487990_10772 | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.551 |
SEA14573.1 | SEA14459.1 | SAMN04487990_10775 | SAMN04487990_10771 | Hypothetical protein. | NTE family protein. | 0.604 |
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