STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmI16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (224 aa)    
Predicted Functional Partners:
SEA58599.1
Hypothetical protein.
     
 0.819
SEA58646.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
   0.811
SEA58557.1
Uracil-DNA glycosylase.
       0.803
tdk
Thymidine kinase.
       0.602
SEA68835.1
tRNA1Val (adenine37-N6)-methyltransferase; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).
  
    0.562
tadA
tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      0.494
SEA58533.1
Putative redox protein.
       0.480
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
   
 0.447
SDZ75235.1
[LSU ribosomal protein L11P]-lysine N-methyltransferase.
 
  
 0.441
SEA58508.1
Exonuclease RecJ.
       0.430
Your Current Organism:
Bizionia paragorgiae
NCBI taxonomy Id: 283786
Other names: B. paragorgiae, Bizionia paragorgiae Nedashkovskaya et al. 2005, DSM 23842, KCTC 12304, KMM 6029, LMG 22571, LMG:22571
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.