STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7T3W2_CAPTEHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)    
Predicted Functional Partners:
R7UAU0_CAPTE
Histone H2A; Belongs to the histone H2A family.
   
 0.954
R7UAA1_CAPTE
WD_REPEATS_REGION domain-containing protein.
    
 0.948
R7TR76_CAPTE
Uncharacterized protein.
    
 0.918
R7UT86_CAPTE
Uncharacterized protein.
    
   0.915
R7VCK5_CAPTE
Uncharacterized protein.
    
 0.913
R7TQH7_CAPTE
Macro domain-containing protein; Belongs to the histone H2A family.
   
 0.907
R7TNL5_CAPTE
RPOLD domain-containing protein.
    
 0.906
R7UAF6_CAPTE
Macro domain-containing protein.
   
 0.905
R7V8Q7_CAPTE
WD_REPEATS_REGION domain-containing protein.
    
 0.904
R7VDQ3_CAPTE
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.902
Your Current Organism:
Capitella teleta
NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.