STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7UEG4_CAPTEUncharacterized protein. (297 aa)    
Predicted Functional Partners:
R7VCT2_CAPTE
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
   
 0.982
R7TRZ9_CAPTE
Nuclear cap-binding protein subunit 2.
    
 0.976
R7TTF8_CAPTE
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.975
R7UUN7_CAPTE
Uncharacterized protein.
  
 
 0.973
R7TUE4_CAPTE
MIF4G domain-containing protein.
    
 0.970
R7TSD9_CAPTE
Uncharacterized protein.
   
 
 0.964
R7U6I9_CAPTE
Uncharacterized protein.
    
 
 0.962
R7VDT4_CAPTE
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.961
R7UTD8_CAPTE
Small nuclear ribonucleoprotein G.
   
 0.959
R7UDS5_CAPTE
Sm domain-containing protein.
   
 0.957
Your Current Organism:
Capitella teleta
NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.