STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7USL5_CAPTERING-type domain-containing protein. (776 aa)    
Predicted Functional Partners:
R7VDA8_CAPTE
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.871
R7T7S6_CAPTE
Small ubiquitin-related modifier.
    
 0.811
R7TPM8_CAPTE
Small ubiquitin-related modifier.
    
 0.796
R7UZC0_CAPTE
Small ubiquitin-related modifier.
    
 0.796
R7UGR3_CAPTE
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]
   
 
 0.753
R7UNH7_CAPTE
Ubiquitin-like domain-containing protein.
    
 0.753
R7TMN0_CAPTE
UBX domain-containing protein.
   
   0.705
R7UHV7_CAPTE
SAM domain-containing protein.
    
 
 0.690
R7T4U3_CAPTE
HDAC_interact domain-containing protein.
   
 0.621
R7T9J4_CAPTE
Uncharacterized protein.
   
 0.621
Your Current Organism:
Capitella teleta
NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.