R7VBS4_CAPTE protein (Capitella teleta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R7VBS4_CAPTE

BTB domain-containing protein. (505 aa)

Predicted Functional Partners:

R7UNK8_CAPTE

0.720

R7UY52_CAPTE

0.694

R7T5C0_CAPTE

0.652

R7V3M6_CAPTE

0.625

R7TMN0_CAPTE

0.603

R7U8T1_CAPTE

0.602

R7TVG9_CAPTE

0.599

R7V6R7_CAPTE

0.597

R7TJS4_CAPTE

0.585

R7UUJ8_CAPTE

0.584

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7T5C0_CAPTE	R7TVG9_CAPTE	R7T5C0	R7TVG9	Uncharacterized protein.	Uncharacterized protein.	0.987
R7T5C0_CAPTE	R7UNK8_CAPTE	R7T5C0	R7UNK8	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.871
R7T5C0_CAPTE	R7UY52_CAPTE	R7T5C0	R7UY52	Uncharacterized protein.	RING-type domain-containing protein.	0.737
R7T5C0_CAPTE	R7V3M6_CAPTE	R7T5C0	R7V3M6	Uncharacterized protein.	BZIP domain-containing protein.	0.755
R7T5C0_CAPTE	R7VBS4_CAPTE	R7T5C0	R7VBS4	Uncharacterized protein.	BTB domain-containing protein.	0.652
R7TJS4_CAPTE	R7U8T1_CAPTE	R7TJS4	R7U8T1	TPR_REGION domain-containing protein.	BBS1 domain-containing protein.	0.993
R7TJS4_CAPTE	R7UUJ8_CAPTE	R7TJS4	R7UUJ8	TPR_REGION domain-containing protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.994
R7TJS4_CAPTE	R7V6R7_CAPTE	R7TJS4	R7V6R7	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.989
R7TJS4_CAPTE	R7VBS4_CAPTE	R7TJS4	R7VBS4	TPR_REGION domain-containing protein.	BTB domain-containing protein.	0.585
R7TMN0_CAPTE	R7UNK8_CAPTE	R7TMN0	R7UNK8	UBX domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.997
R7TMN0_CAPTE	R7UY52_CAPTE	R7TMN0	R7UY52	UBX domain-containing protein.	RING-type domain-containing protein.	0.993
R7TMN0_CAPTE	R7V6R7_CAPTE	R7TMN0	R7V6R7	UBX domain-containing protein.	TPR_REGION domain-containing protein.	0.401
R7TMN0_CAPTE	R7VBS4_CAPTE	R7TMN0	R7VBS4	UBX domain-containing protein.	BTB domain-containing protein.	0.603
R7TVG9_CAPTE	R7T5C0_CAPTE	R7TVG9	R7T5C0	Uncharacterized protein.	Uncharacterized protein.	0.987
R7TVG9_CAPTE	R7UNK8_CAPTE	R7TVG9	R7UNK8	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.751
R7TVG9_CAPTE	R7UY52_CAPTE	R7TVG9	R7UY52	Uncharacterized protein.	RING-type domain-containing protein.	0.678
R7TVG9_CAPTE	R7VBS4_CAPTE	R7TVG9	R7VBS4	Uncharacterized protein.	BTB domain-containing protein.	0.599
R7U8T1_CAPTE	R7TJS4_CAPTE	R7U8T1	R7TJS4	BBS1 domain-containing protein.	TPR_REGION domain-containing protein.	0.993
R7U8T1_CAPTE	R7UUJ8_CAPTE	R7U8T1	R7UUJ8	BBS1 domain-containing protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.992
R7U8T1_CAPTE	R7V6R7_CAPTE	R7U8T1	R7V6R7	BBS1 domain-containing protein.	TPR_REGION domain-containing protein.	0.989

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About