STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7VF99_CAPTEDRBM domain-containing protein. (503 aa)    
Predicted Functional Partners:
R7U613_CAPTE
Uncharacterized protein.
  
 
 0.992
N1PBB0_CAPTE
Brix domain-containing protein.
   
    0.661
R7UHU8_CAPTE
THUMP domain-containing protein.
   
 
 0.658
R7TYM4_CAPTE
tRNA (guanine(26)-N(2))-dimethyltransferase.
   
 
 0.627
N1PBE0_CAPTE
AA_TRNA_LIGASE_II domain-containing protein.
  
 
 0.580
R7VL81_CAPTE
PseudoU_synth_1 domain-containing protein.
  
 
 0.561
R7TC87_CAPTE
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
   
  
 0.539
R7V329_CAPTE
Uncharacterized protein.
  
 
 0.526
R7TAH4_CAPTE
Sas10 domain-containing protein.
   
    0.517
R7TTR2_CAPTE
Uncharacterized protein.
   
    0.517
Your Current Organism:
Capitella teleta
NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009
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