STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspCPutative stress-responsive transcriptional regulator. (127 aa)    
Predicted Functional Partners:
pspB
Phage shock protein B.
 
 
 0.999
pspA
Phage shock protein A.
 
 
 0.998
IL0495
Probable signal transduction protein, containing Hpt domain.
   
 
 0.954
barA
Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains).
   
 
 0.954
IL0728
Predicted ATPase.
     
 0.873
IL0727
Uncharacterized conserved membrane protein.
     
 0.871
IL2152
Multidomain protein, contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain.
  
 
 0.817
pspF
Transcriptional regulator, AtoC family (AAA,HTH domains).
 
     0.701
IL0313
Signaling protein with membrane-bound sensor domain and an ATPase domain.
  
  
 0.688
dppA
ABC-type dipeptide transport system, periplasmic component.
 
     0.617
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis L2TR, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.