STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJK41538.1Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)    
Predicted Functional Partners:
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.974
KJK40991.1
Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.926
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.925
KJK41542.1
PhoH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.917
KJK34611.1
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.903
tdk
Thymidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.892
KJK41005.1
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.879
KJK41540.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.863
KJK37589.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.790
KJK41543.1
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.772
Your Current Organism:
Streptomyces variegatus
NCBI taxonomy Id: 284040
Other names: ATCC 43696, DSM 41464, IFO 15462, INA T-511, JCM 6930, LMG 20315, LMG:20315, NBRC 15462, S. variegatus, VKM Ac-846
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