STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW03487.1Hypothetical protein. (171 aa)    
Predicted Functional Partners:
SDW06631.1
UDPglucose 6-dehydrogenase.
    
  0.666
SDW57320.1
Glucokinase.
   
 
  0.632
rpl39e
LSU ribosomal protein L39E; Belongs to the eukaryotic ribosomal protein eL39 family.
       0.536
rpl31e
Large subunit ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
       0.536
SDW98329.1
Polysaccharide deacetylase.
    
 0.484
eif6
Translation initiation factor 6 (aeIF-6); Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
       0.461
SDX33687.1
Glycosyl transferase family group 2.
    
  0.458
SDX33714.1
Hypothetical protein.
    
  0.458
SDX39459.1
Glycosyl transferase family group 2.
    
  0.458
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.