STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW04012.1mgtE-like transporter. (195 aa)    
Predicted Functional Partners:
SDW04048.1
mgtE-like transporter.
 
    
0.839
SDW29352.1
Uncharacterized conserved protein, contains PhoU and TrkA_C domains.
 
     0.767
SDW03994.1
Hypothetical protein.
       0.601
SDW04070.1
Hypothetical protein.
 
     0.595
SDW82796.1
Hypothetical protein.
  
     0.464
SDW10375.1
Predicted exporter protein, RND superfamily.
  
     0.453
SDW10416.1
Uncharacterized conserved protein.
  
     0.434
SDX06185.1
Predicted exporter protein, RND superfamily.
  
     0.426
SDW03973.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
       0.425
SDX39505.1
Predicted exporter protein, RND superfamily.
  
     0.421
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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