STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW13827.1UDP-galactopyranose mutase. (417 aa)    
Predicted Functional Partners:
SDW39537.1
Phytoene synthase.
 
 
 0.852
SDX03264.1
Farnesyl-diphosphate farnesyltransferase.
  
 
 0.728
SDW13853.1
L-threonine synthase.
     
 0.626
SDW01614.1
Protoporphyrin IX magnesium-chelatase.
 
 
 0.594
SDW93610.1
Putative membrane protein.
 
  
 0.530
SDW13880.1
NADPH2:quinone reductase.
    
 0.511
mfnA
Tyrosine decarboxylase / aspartate 1-decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
  
 
  0.501
SDW01641.1
Cobaltochelatase CobN subunit.
  
  
 0.486
SDW54136.1
2,3-di-O-geranylgeranylglyceryl phosphate reductase.
 
 
 0.456
SDW98917.1
Hypothetical protein.
  
   
 0.443
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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