STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW02925.1Hydroxymethylbilane synthase. (384 aa)    
Predicted Functional Partners:
SDW02971.1
uroporphyrinogen-III synthase.
 
 0.999
SDW31735.1
Porphobilinogen synthase; Belongs to the ALAD family.
 
 0.999
SDW02949.1
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
 0.998
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
  
 0.987
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
 0.961
SDW63388.1
Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
 
 
 0.829
SDW03199.1
Chlorite dismutase.
 
   
 0.822
SDX09428.1
Glutamyl-tRNAGlu reductase, dimerisation domain.
  
  
 0.771
SDW01278.1
Precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase.
 
  
 0.761
SDW01614.1
Protoporphyrin IX magnesium-chelatase.
  
  
 0.684
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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