STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW29962.1ABC-2 type transport system permease protein. (281 aa)    
Predicted Functional Partners:
SDW29935.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.943
SDW99687.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
  
 0.715
SDW00954.1
Signal peptidase, endoplasmic reticulum-type.
  
     0.601
SDW61746.1
Hypothetical protein.
  
     0.581
SDW42837.1
PAP2 superfamily protein.
 
     0.555
SDX15777.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.546
SDW29989.1
Outer membrane lipoprotein-sorting protein.
       0.525
SDW05917.1
Hypothetical protein.
  
  
 0.522
SDX16358.1
Ribonuclease HI.
  
     0.497
SDW39098.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.496
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.