STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW42678.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
SDW42725.1
Hypothetical protein.
     
 0.820
SDW42554.1
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.
       0.810
SDW42591.1
Archaellum biogenesis protein FlaJ, TadC family.
       0.810
SDW42633.1
Hypothetical protein.
       0.810
SDW42656.1
Hypothetical protein.
       0.810
SDW42707.1
Hypothetical protein.
       0.810
SDW42524.1
Hypothetical protein.
       0.417
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.