STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW43735.1Plastocyanin. (821 aa)    
Predicted Functional Partners:
SDW42155.1
Malate synthase, citrate lyase family.
  
     0.604
SDW77125.1
Uncharacterized protein.
  
    0.575
SDW09073.1
Halocyanin domain-containing protein.
  
   
 0.574
SDW90313.1
8-oxo-dGTP diphosphatase.
  
     0.571
SDW83070.1
Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.
   
 0.565
SDX09566.1
Tat (twin-arginine translocation) pathway signal sequence.
   
 0.565
SDW43673.1
Nicotinamide-nucleotide adenylyltransferase.
       0.554
SDW43705.1
Hypothetical protein.
       0.554
SDW43783.1
Major Facilitator Superfamily protein.
  
     0.549
SDW49474.1
iron(III) transport system substrate-binding protein.
  
    0.541
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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