STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW73425.1Thiamine transport system substrate-binding protein. (374 aa)    
Predicted Functional Partners:
SDW73402.1
Thiamine transport system permease protein.
 
 
 0.995
SDW73374.1
Thiamine transport system ATP-binding protein.
    
  0.945
SDW49445.1
iron(III) transport system permease protein.
 
 
 0.799
SDW49421.1
iron(III) transport system ATP-binding protein.
    
  0.609
SDW73449.1
Hypothetical protein.
       0.586
SDW83467.1
Spermidine/putrescine transport system ATP-binding protein.
    
  0.485
SDX33298.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family.
    
  0.485
SDW73483.1
Pyruvate dehydrogenase E1 component alpha subunit.
       0.417
SDW73348.1
Transporter, NhaC family.
       0.400
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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