STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW95001.1Choline dehydrogenase. (543 aa)    
Predicted Functional Partners:
SDW03408.1
Tetratricopeptide repeat-containing protein.
    
 0.987
gap
Glyceraldehyde 3-phosphate dehydrogenase (NAD(P)+).
     
 0.884
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 
  0.875
SDW57332.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.869
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
     
 0.867
SDW57320.1
Glucokinase.
    
  0.863
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.862
SDX22681.1
Phenylpropionate dioxygenase, large terminal subunit.
 
  
 0.757
SDW33737.1
Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily.
  
 
 0.672
dnaK
Molecular chaperone DnaK; Acts as a chaperone.
     
 0.671
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.