STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW98068.1Transcriptional regulator. (358 aa)    
Predicted Functional Partners:
SDX31487.1
Restriction endonuclease Mrr.
  
    0.740
SDW08581.1
Sugar-specific transcriptional regulator TrmB.
  
   
 0.678
SDX39335.1
Sugar-specific transcriptional regulator TrmB.
  
   
 0.673
SDW09335.1
Sugar-specific transcriptional regulator TrmB.
  
   
 0.665
SDW26375.1
Glucoamylase.
  
     0.620
SDW98086.1
Predicted oxidoreductase.
       0.594
SDW94697.1
Protein of unknown function DUF87.
  
     0.510
SDW23950.1
Hypothetical protein.
  
     0.502
SDW98048.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.501
SDW66711.1
Predicted arabinose efflux permease, MFS family.
  
     0.473
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.