STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW98566.1Putative membrane protein. (561 aa)    
Predicted Functional Partners:
SDW98582.1
Hypothetical protein.
 
  
0.961
SDW01641.1
Cobaltochelatase CobN subunit.
  
    0.622
SDW31327.1
GTPase, G3E family.
  
    0.553
SDW98614.1
Hypothetical protein.
       0.532
SDW03174.1
Protease-4.
   
    0.449
SDW40322.1
Protease-4.
   
    0.449
SDW56402.1
Protease-4.
   
    0.449
SDW91335.1
Sporulation-control protein.
  
    0.420
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.