Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDW07569.1 | SDW30318.1 | SAMN05443574_101270 | SAMN05443574_102339 | Formyltetrahydrofolate deformylase. | Aminomethyltransferase. | 0.943 |
SDW07569.1 | SDW74593.1 | SAMN05443574_101270 | SAMN05443574_106138 | Formyltetrahydrofolate deformylase. | IMP cyclohydrolase. | 0.957 |
SDW07569.1 | folD-2 | SAMN05443574_101270 | SAMN05443574_11172 | Formyltetrahydrofolate deformylase. | Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.977 |
SDW07569.1 | gcvT | SAMN05443574_101270 | SAMN05443574_11247 | Formyltetrahydrofolate deformylase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.943 |
SDW07569.1 | glyA | SAMN05443574_101270 | SAMN05443574_11174 | Formyltetrahydrofolate deformylase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.986 |
SDW07569.1 | trpB | SAMN05443574_101270 | SAMN05443574_105284 | Formyltetrahydrofolate deformylase. | Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.515 |
SDW30318.1 | SDW07569.1 | SAMN05443574_102339 | SAMN05443574_101270 | Aminomethyltransferase. | Formyltetrahydrofolate deformylase. | 0.943 |
SDW30318.1 | SDW74593.1 | SAMN05443574_102339 | SAMN05443574_106138 | Aminomethyltransferase. | IMP cyclohydrolase. | 0.953 |
SDW30318.1 | SDX02801.1 | SAMN05443574_102339 | SAMN05443574_11249 | Aminomethyltransferase. | Glycine dehydrogenase (decarboxylating) alpha subunit. | 0.996 |
SDW30318.1 | SDX02824.1 | SAMN05443574_102339 | SAMN05443574_11250 | Aminomethyltransferase. | Glycine dehydrogenase (decarboxylating) beta subunit. | 0.997 |
SDW30318.1 | folD-2 | SAMN05443574_102339 | SAMN05443574_11172 | Aminomethyltransferase. | Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.949 |
SDW30318.1 | gcvH | SAMN05443574_102339 | SAMN05443574_11248 | Aminomethyltransferase. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.996 |
SDW30318.1 | gcvT | SAMN05443574_102339 | SAMN05443574_11247 | Aminomethyltransferase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.949 |
SDW30318.1 | glyA | SAMN05443574_102339 | SAMN05443574_11174 | Aminomethyltransferase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.974 |
SDW30318.1 | thyX | SAMN05443574_102339 | SAMN05443574_109107 | Aminomethyltransferase. | Thymidylate synthase (FAD); Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.934 |
SDW74593.1 | SDW07569.1 | SAMN05443574_106138 | SAMN05443574_101270 | IMP cyclohydrolase. | Formyltetrahydrofolate deformylase. | 0.957 |
SDW74593.1 | SDW30318.1 | SAMN05443574_106138 | SAMN05443574_102339 | IMP cyclohydrolase. | Aminomethyltransferase. | 0.953 |
SDW74593.1 | SDX02824.1 | SAMN05443574_106138 | SAMN05443574_11250 | IMP cyclohydrolase. | Glycine dehydrogenase (decarboxylating) beta subunit. | 0.702 |
SDW74593.1 | folD-2 | SAMN05443574_106138 | SAMN05443574_11172 | IMP cyclohydrolase. | Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.986 |
SDW74593.1 | gcvH | SAMN05443574_106138 | SAMN05443574_11248 | IMP cyclohydrolase. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.500 |
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